EMAlgorithm             EM algorithm for Gaussian mixture models
GMCM-package            Fast optimization of Gaussian Mixture Copula
                        Models
SimulateGMCMData        Simulation from Gaussian mixture (copula)
                        models
Uhat                    Fast ranking function
as.theta                Coerce a list to a theta object
choose.theta            Heuristically chosen starting value of theta
classify                Classify observations
dmvnormal               Multivariate Gaussian density and simulation
fit.full.GMCM           Estimate GMCM parameters of the general model
fit.meta.GMCM           Estimate GMCM parameters of the special model
freshVsFrozen           Reproducibility between Fresh and Frozen B-cell
                        subtypes
full2meta               Convert between parameter formats
get.IDR                 Posterior class probabilities, local, and
                        adjusted IDRs.
goodness.of.fit         Goodness of fit for the general GMCM
is.theta                Check if parameters are valid
plot.theta              Plotting method for "theta" objects
print.theta             Print method for theta class
rtheta                  Get random parameters for the Gaussian mixture
                        (copula) model
runGMCM                 Run the GMCM shiny application
summary.theta           Summary method for theta class
u133VsExon              Reproducibility between U133 plus 2 and Exon
                        microarrays
