%between% | Range helper functions |
aggregate | Aggreagate quantitative features |
aggregate_by_matrix | Aggreagate quantitative features |
aggregate_by_vector | Aggreagate quantitative features |
asInteger | Coerce functions |
between | Range helper functions |
bin | Binning |
closest | Relaxed Value Matching |
coefMA | Smoothing |
coefSG | Smoothing |
coefWMA | Smoothing |
coerce | Coerce functions |
colCounts | Counts the number of features |
colMeansMat | Aggreagate quantitative features |
colSumsMat | Aggreagate quantitative features |
common | Relaxed Value Matching |
distance | Spectra Distance/Similarity Measurements |
dotproduct | Spectra Distance/Similarity Measurements |
entropy | Spectral entropy |
formatRt | Format Retention Time |
getImputeMargin | Quantitative mass spectrometry data imputation |
gnps | GNPS spectrum similarity scores |
group | Grouping of numeric values by similarity |
i2index | Input parameter check for subsetting operations |
imputeMethods | Quantitative mass spectrometry data imputation |
impute_bpca | Quantitative mass spectrometry data imputation |
impute_fun | Quantitative mass spectrometry data imputation |
impute_knn | Quantitative mass spectrometry data imputation |
impute_matrix | Quantitative mass spectrometry data imputation |
impute_min | Quantitative mass spectrometry data imputation |
impute_MinDet | Quantitative mass spectrometry data imputation |
impute_MinProb | Quantitative mass spectrometry data imputation |
impute_mixed | Quantitative mass spectrometry data imputation |
impute_mle | Quantitative mass spectrometry data imputation |
impute_neighbour_average | Quantitative mass spectrometry data imputation |
impute_QRILC | Quantitative mass spectrometry data imputation |
impute_RF | Quantitative mass spectrometry data imputation |
impute_with | Quantitative mass spectrometry data imputation |
impute_zero | Quantitative mass spectrometry data imputation |
isPeaksMatrix | Check functions |
join | Relaxed Value Matching |
join_gnps | GNPS spectrum similarity scores |
localMaxima | Local Maxima |
maxi | Maximum MS Intensity Value |
medianPolish | Return the Median Polish (Robust Twoway Decomposition) of a matrix |
navdist | Spectra Distance/Similarity Measurements |
ndotproduct | Spectra Distance/Similarity Measurements |
nentropy | Spectral entropy |
neuclidean | Spectra Distance/Similarity Measurements |
noise | Noise Estimation |
normalizeMethods | Quantitative data normalisation |
normalize_matrix | Quantitative data normalisation |
nspectraangle | Spectra Distance/Similarity Measurements |
ppm | PPM - Parts per Million |
rbindFill | Combine R Objects by Row |
refineCentroids | Refine Peak Centroids |
rla | Calculate relative log abundances |
robustSummary | Return the Robust Expression Summary of a matrix |
rowRla | Calculate relative log abundances |
rt2character | Format Retention Time |
rt2numeric | Format Retention Time |
smooth | Smoothing |
sumi | Summing MS Intensity Values |
validPeaksMatrix | Validation functions |
valleys | Find Peak Valleys |
vapply1c | vapply wrappers |
vapply1d | vapply wrappers |
vapply1l | vapply wrappers |
which.first | Which is the first/last TRUE value. |
which.last | Which is the first/last TRUE value. |